CIF2Cell: Generating geometries for electronic structure programs
نویسنده
چکیده
The CIF2Cell program generates the geometrical setup for a number of electronic structure programs based on the crystallographic information in a Crystallographic Information Framework (CIF) file. The program will retrieve the space group number, Wyckoff positions and crystallographic parameters, make a sensible choice for Bravais lattice vectors (primitive or principal cell) and generate all atomic positions. Supercells can be generated and alloys are handled gracefully. The code currently has output interfaces to the electronic structure programs ABINIT, CASTEP, CPMD, Crystal, Elk, Exciting, EMTO, Fleur, RSPt, Siesta and VASP.
منابع مشابه
A Novel Toolbox for Generating Realistic Biological Cell Geometries for Electromagnetic Microdosimetry
Researchers in bioelectromagnetics often require realistic tissue, cellular and sub-cellular geometry models for their simulations. However, biological shapes are often extremely irregular, while conventional geometrical modeling tools on the market cannot meet the demand for fast and efficient construction of irregular geometries. We have designed a free, user-friendly tool in MATLAB that comb...
متن کاملFirst–Principle Calculation of the Electronic and Optical Properties of Nanolayered ZnO Polymorphs by PBE and mBJ Density Functionals
First principle calculations of nanolayered ZnO polymorphs (Wurzite–, Zincblende–, Rocksalt–structures) in the scheme of density functional theory were performedwith the help of full potential linear augmented plane wave (FP-LAPW) method. Theexchange - correlation potential is described by generalized gradient approximation asproposed by Perdew–Burke–Ernzrhof (GGA–PBE) and modified Becke–Johns...
متن کاملThe Optimal Design of Heat Sinks: A Review
Heat sinks are used in industrial equipment to dissipate the excess heat from their heat-generating parts to the ambient. In the last few years, efforts on manufacturing electronic or mechanical devices with less weight, space, and lower cost were spent. Heat dissipation from the heat sink is stalling a big problem which many researchers are trying to solve. The aim of this study is to brief th...
متن کاملF-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.
Coarse-grained models represent attractive approaches to analyze and simulate ribonucleic acid (RNA) molecules, for example, for structure prediction and design, as they simplify the RNA structure to reduce the conformational search space. Our structure prediction protocol RAGTOP (RNA-As-Graphs Topology Prediction) represents RNA structures as tree graphs and samples graph topologies to produce...
متن کاملOptimal Shaping of Non-Conventional Permanent Magnet Geometries for Synchronous Motors via Surrogate Modeling and Multi-Objective Optimization Approach
A methodology is proposed for optimal shaping of permanent magnets with non-conventional and complex geometries, used in synchronous motors. The algorithm includes artificial neural network-based surrogate model and multi-objective search based optimization method that will lead to Pareto front solutions. An interior permanent magnet topology with crescent-shaped magnets is also introduced as t...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Computer Physics Communications
دوره 182 شماره
صفحات -
تاریخ انتشار 2011